Staphylococcus aureus subsp. aureus USA300_FPR3757

f g x - functional genomics explorer

Plates and Reads

Sequence plates 230
Sequence read files expected (96/plate) 22080
Sequence read files observed 21968
Plate wells without usable reads 259
Usable sequence reads (>= 50 nt.) 21709
Usable reads without vector alignment 1444
Usable vector alignable reads without genome alignment 1382
Genome-aligned reads 18883
CDS, rRNA, tRNA, and between-gene hits 18738

Staphylococcus aureus subsp. aureus USA300_FPR3757 RefSeq genes

CDS 2560 (gi = 87159884)
rRNA 16 (gi = 87159884)
tRNA 53 (gi = 87159884)

Transposon insertions - CDS

Hits 14085
Hits, in quartile 1 of gene length 4243 30%
Hits, in quartile 2 of gene length 3548 25%
Hits, in quartile 3 of gene length 2914 21%
Hits, in quartile 4 of gene length 3226 23%
Distinct CDS with hit 2064 81%
Distinct CDS with hit in first third of gene length 1474 58%
Distinct CDS with NO HIT 496 19%
Distinct CDS, hits per CDS: min 1
Distinct CDS, hits per CDS: max 121 (SAUSA300_1327: cell surface protein; 31, 266 nt. Long)
Distinct CDS, hits per CDS: average 6
Distinct CDS, hits per CDS: std deviation 6.2

Transposon insertions - rRNA

Hits 31
Distinct rRNA with hit 3 19%

Transposon insertions - tRNA

Hits 3
Distinct tRNA with hit 2 4%

Transposon insertions - between genes

Hits 4619